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TMS Split is a service that allows extracting segments from protein sequences (especially transporters) using several criteria: 1) cut a specific residue range, 2) cut a sequence in any number of equal parts, 3) extract sequence fragments with groups of overlapping or nonoverlapping alpha-TMSs, and 4) get a sequence fragment containing a range of TMSs. When cutting segments based on transmembrane segments (TMS), HMMTOP is used to infer TMS. This website was developed by Dr. Milton Saier's group. |
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Contact | Questions or comments can be sent to: Vasu Pranav Sai Iddamsetty <vpranavsai at-sign gmail dot com> or Arturo Medrano <l1medranosoto at-sign ucsd dot edu>. |